or by using the Transform selected VOIs button in the VOI Tools panel.By applying the transformation during the loading operation,.If the user has a set a VOIs defined on a different data set and a spatial transformation which maps the other data set to the current, this transformation can be applied to the VOIs in two ways: Additionally, a normalization folder is available which contains the template image in NifTI format (norm_template.nii) and a mask folder where the mask image is saved in NifTI format (mask.nii).
#Convert image format atlas series
The image series is saved in NifTI format, and a text file with the VOI names is create. Using the above configuration, the CPFPX subdirectory is created in resources/templates/voitemplates. To this purpose enable the Normalization files (optional) checkbox. Optionally, normalization files can be "appended" to the template. Note that you can filter the image files and select multiple files at once. Nibabel images always use RAS+ output coordinates, regardless of the preferred output coordinates of the underlying format. A dialog opens from which you can find and select the images you want to add to the Atlas. Select Add Images from the pop up context menu to add single images. Dynamic range 12 bits, Dynamic range 12 bits (storage 16 bits). Right click the root Atlas entry in the Outline pane. If the layout contains more than one page, each page will be exported to a file with the given filename with the page number appended (e.g. After activating the refresh button in the Atlas panel of Template, the new template appears and can be used for statistics. You can choose your image format: JPEG 2000 or GeoTIFF. Select the image format, the folder and filename (e.g. Using this name a subdirectory is created in resources/templates/voitemplates, where the image series is saved in NifTI format, and a text file with the VOI names is created. The same ucon is available in the lateral task bar.Ī dialog window appears which requests a name for template. Activate the Create Template Atlas icon available on the right side of the VOI Group.Using RAW data losslessly converted to the TIFF files is preferred. Important: do NOT include VOIs (such as a whole-brain VOI) which cover other VOIs. Agisoft Metashape is an advanced image-based 3D modeling solution aimed at creating. On the Group tab, select the VOIs to be included in the template.Outline a set of contour VOIs in the VOIs page.Load the image series in the PVIEW tool.An image series for which a set of contour VOIs has been defined can easily be converted into a template as follows:
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